Genomic Identification and Expression Analysis of the Phosphate Transporter Gene Family in Poplar.
Identifieur interne : 001846 ( Main/Exploration ); précédent : 001845; suivant : 001847Genomic Identification and Expression Analysis of the Phosphate Transporter Gene Family in Poplar.
Auteurs : Chunxia Zhang [République populaire de Chine] ; Sen Meng [République populaire de Chine] ; Mingjun Li [République populaire de Chine] ; Zhong Zhao [République populaire de Chine]Source :
- Frontiers in plant science [ 1664-462X ] ; 2016.
Abstract
Inorganic phosphate is one of key macronutrients essential for plant growth. The acquisition and distribution of phosphate are mediated by phosphate transporters functioning in various physiological and biochemical processes. In the present study, we comprehensively evaluated the phosphate transporter (PHT) gene family in the latest release of the Populus trichocarpa genome (version 3.0; Phytozome 11.0) and a total of 42 PHT genes were identified which formed five clusters: PHT1, PHT2, PHT3, PHT4, and PHO. Among the 42 PHT genes, 41 were localized to 15 Populus chromosomes. Analysis of these genes led to identification of 5-14 transmembrane segments, most of which were conserved within the same cluster. We identified 234 putative cis elements in the 2-kb upstream regions of the 42 PHT genes, many of which are related to development, stress, or hormone. Tissue-specific expression analysis of the 42 PtPHT genes revealed that 25 were highly expressed in the roots of P. tremula, suggesting that most of them might be involved in Pi uptake. Some PtPHT genes were highly expressed in more than six of the twelve investigated tissues of P. tremula, while the expression of a few of them was very low in all investigated tissues. In addition, the expression of the PtPHT genes was verified by quantitative real-time PCR in four tissues of P. simonii. Transcripts of 7 PtPHT genes were detected in all four tested tissues of P. simonii. Most PtPHT genes were expressed in the roots of P. simonii at high levels. Further, PtPHT1.2 and PtPHO9 expression was increased under drought conditions, irrespective of the phosphate levels. In particular, PtPHT1.2 expression was significantly induced by approximately 90-fold. However, the transcriptional changes of some PtPHT genes under drought stress were highly dependent on the phosphate levels. These results will aid in elucidation of the functions of PtPHT in the growth, development, and stress response of the poplar plant.
DOI: 10.3389/fpls.2016.01398
PubMed: 27695473
PubMed Central: PMC5025438
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State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F UniversityYangling, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Forestry, Northwest A&F UniversityYangling, China; State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F UniversityYangling</wicri:regionArea><wicri:noRegion>Northwest A&F UniversityYangling</wicri:noRegion></affiliation></author><author><name sortKey="Meng, Sen" sort="Meng, Sen" uniqKey="Meng S" first="Sen" last="Meng">Sen Meng</name><affiliation wicri:level="1"><nlm:affiliation>College of Forestry, Northwest A&F University Yangling, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Forestry, Northwest A&F University Yangling</wicri:regionArea><wicri:noRegion>Northwest A&F University Yangling</wicri:noRegion></affiliation></author><author><name sortKey="Li, Mingjun" sort="Li, Mingjun" uniqKey="Li M" first="Mingjun" last="Li">Mingjun Li</name><affiliation wicri:level="1"><nlm:affiliation>College of Horticulture, Northwest A&F University Yangling, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Horticulture, Northwest A&F University Yangling</wicri:regionArea><wicri:noRegion>Northwest A&F University Yangling</wicri:noRegion></affiliation></author><author><name sortKey="Zhao, Zhong" sort="Zhao, Zhong" uniqKey="Zhao Z" first="Zhong" last="Zhao">Zhong Zhao</name><affiliation wicri:level="1"><nlm:affiliation>College of Forestry, Northwest A&F University Yangling, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Forestry, Northwest A&F University Yangling</wicri:regionArea><wicri:noRegion>Northwest A&F University Yangling</wicri:noRegion></affiliation></author></analytic><series><title level="j">Frontiers in plant science</title><idno type="ISSN">1664-462X</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Inorganic phosphate is one of key macronutrients essential for plant growth. The acquisition and distribution of phosphate are mediated by phosphate transporters functioning in various physiological and biochemical processes. In the present study, we comprehensively evaluated the phosphate transporter (PHT) gene family in the latest release of the <i>Populus trichocarpa</i> genome (version 3.0; Phytozome 11.0) and a total of 42 <i>PHT</i> genes were identified which formed five clusters: <i>PHT1, PHT2, PHT3, PHT4</i>, and <i>PHO</i>. Among the 42 <i>PHT</i> genes, 41 were localized to 15 <i>Populus</i> chromosomes. Analysis of these genes led to identification of 5-14 transmembrane segments, most of which were conserved within the same cluster. We identified 234 putative <i>cis</i> elements in the 2-kb upstream regions of the 42 <i>PHT</i> genes, many of which are related to development, stress, or hormone. Tissue-specific expression analysis of the 42 <i>PtPHT</i> genes revealed that 25 were highly expressed in the roots of <i>P. tremula</i>, suggesting that most of them might be involved in Pi uptake. Some <i>PtPHT</i> genes were highly expressed in more than six of the twelve investigated tissues of <i>P. tremula</i>, while the expression of a few of them was very low in all investigated tissues. In addition, the expression of the <i>PtPHT</i> genes was verified by quantitative real-time PCR in four tissues of <i>P. simonii.</i> Transcripts of <i>7 PtPHT</i> genes were detected in all four tested tissues of <i>P. simonii</i>. Most <i>PtPHT</i> genes were expressed in the roots of <i>P. simonii</i> at high levels. Further, <i>PtPHT1.2</i> and <i>PtPHO9</i> expression was increased under drought conditions, irrespective of the phosphate levels. In particular, <i>PtPHT1.2</i> expression was significantly induced by approximately 90-fold. However, the transcriptional changes of some <i>PtPHT</i> genes under drought stress were highly dependent on the phosphate levels. These results will aid in elucidation of the functions of <i>PtPHT</i> in the growth, development, and stress response of the poplar plant.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">27695473</PMID><DateRevised><Year>2020</Year><Month>10</Month><Day>01</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1664-462X</ISSN><JournalIssue CitedMedium="Print"><Volume>7</Volume><PubDate><Year>2016</Year></PubDate></JournalIssue><Title>Frontiers in plant science</Title><ISOAbbreviation>Front Plant Sci</ISOAbbreviation></Journal><ArticleTitle>Genomic Identification and Expression Analysis of the Phosphate Transporter Gene Family in Poplar.</ArticleTitle><Pagination><MedlinePgn>1398</MedlinePgn></Pagination><Abstract><AbstractText>Inorganic phosphate is one of key macronutrients essential for plant growth. The acquisition and distribution of phosphate are mediated by phosphate transporters functioning in various physiological and biochemical processes. In the present study, we comprehensively evaluated the phosphate transporter (PHT) gene family in the latest release of the <i>Populus trichocarpa</i> genome (version 3.0; Phytozome 11.0) and a total of 42 <i>PHT</i> genes were identified which formed five clusters: <i>PHT1, PHT2, PHT3, PHT4</i>, and <i>PHO</i>. Among the 42 <i>PHT</i> genes, 41 were localized to 15 <i>Populus</i> chromosomes. Analysis of these genes led to identification of 5-14 transmembrane segments, most of which were conserved within the same cluster. We identified 234 putative <i>cis</i> elements in the 2-kb upstream regions of the 42 <i>PHT</i> genes, many of which are related to development, stress, or hormone. Tissue-specific expression analysis of the 42 <i>PtPHT</i> genes revealed that 25 were highly expressed in the roots of <i>P. tremula</i>, suggesting that most of them might be involved in Pi uptake. Some <i>PtPHT</i> genes were highly expressed in more than six of the twelve investigated tissues of <i>P. tremula</i>, while the expression of a few of them was very low in all investigated tissues. In addition, the expression of the <i>PtPHT</i> genes was verified by quantitative real-time PCR in four tissues of <i>P. simonii.</i> Transcripts of <i>7 PtPHT</i> genes were detected in all four tested tissues of <i>P. simonii</i>. Most <i>PtPHT</i> genes were expressed in the roots of <i>P. simonii</i> at high levels. Further, <i>PtPHT1.2</i> and <i>PtPHO9</i> expression was increased under drought conditions, irrespective of the phosphate levels. In particular, <i>PtPHT1.2</i> expression was significantly induced by approximately 90-fold. However, the transcriptional changes of some <i>PtPHT</i> genes under drought stress were highly dependent on the phosphate levels. These results will aid in elucidation of the functions of <i>PtPHT</i> in the growth, development, and stress response of the poplar plant.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Chunxia</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>College of Forestry, Northwest A&F UniversityYangling, China; State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F UniversityYangling, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Meng</LastName><ForeName>Sen</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>College of Forestry, Northwest A&F University Yangling, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Mingjun</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>College of Horticulture, Northwest A&F University Yangling, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhao</LastName><ForeName>Zhong</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>College of Forestry, Northwest A&F University Yangling, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2016</Year><Month>09</Month><Day>16</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Front Plant Sci</MedlineTA><NlmUniqueID>101568200</NlmUniqueID><ISSNLinking>1664-462X</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">drought</Keyword><Keyword MajorTopicYN="N">expression profile</Keyword><Keyword MajorTopicYN="N">genome-wide analysis</Keyword><Keyword MajorTopicYN="N">phosphate levels</Keyword><Keyword MajorTopicYN="N">phosphate 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